Results for "format"
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orthodotter: Synteny plots (oxford grid)
...-y <int> : resolution on y axis, default is 600 -r <int> : radius of circle representing orthologous genes -format : could be png, gif, jp...2471 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...and rapidly developing technology. It is not clear what will be most informative. We hope that IONiseR...raw or event level data, and want to jump straight to the getting FASTQ format files from fast5 files you ca...2365 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...r noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream as...2361 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...st", bubbles, merged clusters, sequence-heterogeneous clusters, etc). Many of these additional sources may optionally applied. simNGS takes fasta format sequences and a file describi...2360 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each...2359 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
...ate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply runni...to: check on a running simulation and see detailed status and logging information; extract fasta sequence fi...2350 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic a...igned to help users to distinguish the difference between different formats. Please refer user manual or...2341 days ago
xmatchview: smith-waterman alignment visualization
...etween DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatchview-c...2330 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...Ades. RGM can be run with other genome assemblers if they use the graph format as SPAdes files. For more de...phs to Rectangle Graphs for Genome Assembly, Lecture Notes in Bioinformatics 7534 (2012), pp. 249-...2330 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...et of sequences: the de Bruijn graph should appear in fasta format with 1 entry per node, the meta information should be in the format:&g...ions of the long reads, and additionally a file in the input format containing uncorrected reads....1992 days ago
