Results for "fragment size"
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Minia is a short-read assembler based on a de Bruijn graph,...ommand line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out outp...rGenie can be used to determine the best k-mer size, minimum abundance of correct...2705 days ago
- The objective of this activity is to help you understand how to run Velvet in general, how to accurately estimate the insert size of a paired-end library throu...
2704 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV...from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tan...
2703 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weigh...pair; -i) (Comma separated list of) insert size(s) of the library(-ies); &nb...t of) library(-ies) standard deviation(s) of insert size(s); -t) Bundle thresh...
2700 days ago
- ...can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it imp...
2694 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cact...memory on at least one machine when aligning mammal-sized genomes; less memory is need...ed in the submodules/ directory. This increases the size and build time but greatly si...
2665 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. W...Cancer Genome Atlas Project has seqenced over 30 different cancers with sample size of each cancer type being ove...
2635 days ago
- MaxBin is software for binning assembled metagenomic sequences based on an Expectation-...me-related statistics, including estimated completeness, GC content and genome size in the binning summary page.U...
2617 days ago
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) show...or 16S rRNA gene information is not available. For example, a partial genomic frag...
2558 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and managem...ar and regular cladograms or phylograms, exploring and navigating trees of any size is simple. https://itol.embl...2483 days ago
