Results for "fragments"
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RACA: Reference-Assisted Chromosome Assembly
...Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome info...2962 days ago
- ...ncy reduction: detection and selectively removal of redundant contigs from an initial de novo assembly scaffolding: joining of genome fragments using paired-end and/or mate-...
2814 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequence...
2629 days ago
- MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175
2631 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...ting sequences in the published genome of the kelp Saccharina japonica. Analyses were based on multiple blastn searches with short sequence fragments. They revealed a number of pr...2366 days ago
SCUBAT: Scaffolding Contigs Using Blat And Transcripts
SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.2257 days ago
Digest: In silico restriction digest of complete genomes
...to retrieve number of cleavages yielded by commercially available endonucleases in up-to-date sequenced prokaryotic genomes. When the number of fragments is bellow 50, Pulse Field gel...2195 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
...an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to &...2195 days ago
LAMSA: fast split read alignment with long approximate matches
...rategy. That is, LAMSA initially splits the read into relatively long fragments and co-linearly align them to...ing errors, and mitigate the effect of repeats. The alignments of the fragments are then used for implementin...2194 days ago
- TACOA is a software that can accurately predict the taxonomic origin of genomic fragments from metagenomic data sets by combining the advantages of the k -NN approach with a smoothing...
2193 days ago
