Results for "gene"
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Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a...2749 days ago
- ...mosomes, while allowing detailed inspection of individual reads (Supplementary Note 1). For example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1 and EIF3H. While it ha...
2748 days ago
- ...A sequencing libraries are enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of P...mina MiSeq), and assigns them to target genes using BLASTx or BWA. The rea...ired-end sequence reads). When HybPiper generates sequence files from the...
2734 days ago
- ...omparative genomics remains a pivotal strategy to study the evolution of gene organization, and this primac...t can represent and compare unlimited numbers of genomes in a broad phylogenetic view. In addition, Genomic...
2691 days ago
- ...can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for generating the synteny corresponde...
2686 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...bial (bacterial and archaeal) gene finding program developed at...Prodigal is an extremely fast gene recognition tool (written in...y locates the 3' end of every gene in the experimentally verifie...is freely available under the General Public License. ...2679 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RNA-seq anal...1120 days ago
- ...sembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable region of the 16S gene, or the constant regions arou...
2654 days ago
- ...tions be as sensitive as possible. Specificity is not a concern, as incorrect annotations are not likely not have significant alignments with other gene annotations. Compare all exo...
2640 days ago
- ...read coverage can be displayed for draft genomes; customized graphs and annotations can be displayed. Using a user-defined set of genes as input, BRIG can display gene presence, absence, truncation...
2629 days ago
