Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM ap...2321 days ago
2309 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...algorithms and methodologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different conservative levels, and genetic variation from pan-genome...2305 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the in...and pasting identifiers (one per line) or by using the gene ID search tool or with...2300 days ago
2293 days ago
GenomeTools: The versatile open source genome analysis software
...le binary named gt. It is based on a C library named “libgenometools” which consists of several modules. If you are interested in gene prediction, have a look at&nb...2290 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...ibrary of methods, and providing a novel set of standalone tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based p...2279 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replico...ximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to...2264 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less frequent in...2257 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes",...rsity, seehttp://arthropods.eugenes.org/EvidentialGene/Construct...e, combining all evidence for genes, from expressed sequences, g...hropods.eugenes.org/EvidentialGene/trassembly.html https://sour...2201 days ago