Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as...agenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski, Gene W. Tys...2336 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to ind...2315 days ago
Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exp...2325 days ago
2313 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platform with graphic interface. Serials of alg...tegrated to analyze and visualize genomics structure variation, gene distribution with different conservative levels, and genetic var...2309 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small s...analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the in...iers (one per line) or by using the gene ID sea...2303 days ago
2297 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools&nbs...nometools” which consists of several modules. If you are interested in gene predic...2294 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based p...ng distances between trees of different size or including duplications, and (iv) providing seamle...2282 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission and f...aximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs....2267 days ago