Results for "genome assembly"
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DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e a lineage probability index (LPI) score for each genome p...2886 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome....
2886 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uni...
2885 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-w...
2881 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...sks like performing upper-quantile normalization on expression data or convert genome w...
2879 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than...himeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genomes....2873 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome a...
2865 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing e...
2865 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for d...ion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...sults, but the method gains power across genomes...
2810 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...FF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...;a program for aligning sequences to reference genome....
2811 days ago
