Results for "genome notes"
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Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...age plots (TAGC plots) to visualise the contents of genom...2899 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assemb...assembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genom...
2899 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target...Instructions: set the read length/configuration and genome size, then select what you wa... C = Coverage (X),L = Read length (bp), G = Haploid genom...2183 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...te a lineage probability index (LPI) score for each genom...
2891 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT de...cestral (vertically derived) genes in its recipient genom...
2891 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with un...
2890 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genom...
2885 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...sks like performing upper-quantile normalization on expression data or convert genom...
2884 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than B...Chimeric sequence detection. PILER >De novo genome repeat finder. PILER-CR >Detection of CRISPR repeats in bacterial genom...2877 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genom...
2870 days ago
