2967 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, rep...pts, often generating full-length transcripts for a dominant isoform, but then reports just the unique portions of a...2964 days ago
2950 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome...2950 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome....2950 days ago
REAPR: a universal tool for genome assembly evaluation
...PR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be use...rors in an assembly for manual inspection. It reports mis-assemblies and other warn...2950 days ago
2938 days ago
2937 days ago
2930 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is i...equence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome...2930 days ago