Results for "genome reports"
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methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. Th...tion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome...2906 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome...
2896 days ago
- The Genome Assembly Evaluation Metrics...hence enabling the generation of standard reports. GAEMR’s analysis phi...well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those pieces...
2895 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a targe...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome...2179 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selec...e a lineage probability index (LPI) score for each genome...
2887 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome....
2887 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uni...
2886 days ago
- ...e 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or...d organisms. Use a different assembler if a tool like FastQC reports your data quality is dubious....
2830 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers) at distal...mapping interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-...
2882 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...sks like performing upper-quantile normalization on expression data or convert genome...
2880 days ago
