Results for "genomic"
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...and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variat...2713 days ago
- ..., R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) data to identify CNVs. EXCAVATOR2 enhances the identification of all genomic CNVs, both overlapping and no...
2711 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the mapping and ali...2697 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to...ly on global alignment: regions of the two assemblies representing the same genomic locus (called ...2692 days ago
- ...f an assembly generated with PacBio long reads alone. This is counterintuitive because illumina short reads are not typically considered to cover genomic regions which PacBio long rea...
2692 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...n in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations. Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences ev...2682 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute compl...
2615 days ago
- ...arse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteri...he nucleotide level. The former "coarse-grained" alignment can explore genomic rearrangements and reduce the...
2627 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...rising, allowing for comparative analyses of genomic variation. Such analyses are...ircular approach, where relationships between genomic regions are indicated by arcs...comprehensive interpretation of all important genomic variations together with vari...2662 days ago
- ...ve exons in all or most of the genomes), join neighboring (adjacent in genomic coordinates, in each genome)...ogous segments. The cliques from each run are used to output the exact genomic coordinates of anchors within...
2643 days ago
