Next generation sequencing in R or bioconductor environment
...entation rtracklayer rtracklayer provides an interface for exporting annotation feature data to various genome browsers and file formats (such as GFF). See the Small RNA Profiling...3620 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nloaded tracks from dbSNP Also accepts: FASTA, GFF/GTF/GVF, BED, Wiggle, Cosmic,.../binding; Input: multiple: SGR/TXT, BED, BED6, GFF; if using prealigned sequence...digree data); updated April 2015 Input: FASTA, GFF3, GVF Output: CDR (condenser...2904 days ago
Steps to find all the repeats in the genome !
..."genome.fasta". ./RepeatMasker -pa <number_of_processors> -nolow -norna -no_is -div <divergence_value> -lib RepeatMaskerLib.embl -gff -xsmall -small -poly -species...244 days ago