Results for "gff"
Bio-Scripts
...sequence file in FASTA format. The GFF file contains information abo...utline of the steps : #Parse the GFF file to extract information a...Seq def extract_protein_sequence(gff_file, genome_fasta, gene_id):...rotein_sequence # Example usage gff_file = 'path/to/your/file.gff...111 days ago
Perl and BioPerl script to extract protein sequences using GFF file !
...nings; use Bio::DB::Fasta; use Bio::SeqIO; # Paths to your GFF file and genome FASTA file my $gff_file = 'path/to/your/file.gff...ct my $gene_id_to_extract = 'your_gene_id'; # Step 1: Parse GFF file to get gene locations m...111 days ago
Python script to parse GFF file
def parse_gff(gff_file): features = [] with open(gff_file, 'r') as f: for line in f: if not line...features.append(feature) return features # Usage example gff_file = 'example.gff' parsed_...55 days ago
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