BOL: Results for "gff3"

Results for "gff3"

- Rahul Nayak@rahul
Ancient whole genome duplication (WGD) detection tools !
...//www.life.illinois.edu/ming/downloads/Spontaneum_genome/Sspon.v20190103.gff3.gzgunzip *.gz First conda...bute ID \ -ks wgd_ksd/Sspon.v20190103.cds.fasta.ks.tsv \ Sspon.v20190103.gff3 Sspon_cds.out/Sspon.v20190103...
1148 days ago

- Abhimanyu Singh@abhimanyu
Barrnap: Bacterial ribosomal RNA predictor
...(5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S). It takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new NH...
2543 days ago
- Jit@jit.aber
Prokka: tool for the rapid annotation of prokaryotic genomes
...A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are r...
2610 days ago
+5 more Bookmarks

- Jitendra Prajapati@jprajapati81
List of Bioinformatics Software Tools for Next Generation Sequencing
...ants; Four tools: VAT (Variant annotation tool), VST (Variant Selection Tool), VAAST, pVAAST (for pedigree data); updated April 2015 Input: FASTA, GFF3, GVF Output: CDR (condenser...
2901 days ago

- Jit@jit.aber
get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa
2294 days ago
- Rahul Nayak@rahul
This script will #extract the intron feature #gff3 and sequence from gene_exon gff3 and fasta file. Extract-intron-from-gff3
1914 days ago
+1 more Wire posts

- Jit@jit.aber
Release Notes for Genome Workbench 2.10.5
...rated with Genome Workbench (Tutorial, Video) New export function for BAM/cSRA coverage graphs (Tutorial) New export function for alignments GFF3 format ((Tutorial)) Tree Vie...
2907 days ago

- Jit@jit.aber
Perl script to convert GFF 2 FASTA !
...x the genome my $file_fasta = $ARGV[0]; my $db = Bio::DB::Fasta->new($file_fasta); print ("Genome fasta parsed\n"); ### Second, parse the GFF3 my %CDS; my %CDNA; my $mRN...
2132 days ago
- Jit@jit.aber
Install gffread using Conda !
...ransaction: done #Run as follows (jitENV) jitendra@Bathymodiolus:~$ gffread -w cds.fa -g ed.clean.fasta gene_structures_post_PASA_updates.19157.gff3 #There are also another go...
1196 days ago