Results for "human reference genome"
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methylKit is an R package for DNA methylation analysis and annotation from high-through...ion data for 5hmC obtained from Tab-seq or oxBS-seq. It can also handle whole-genome bisulfite sequencing data if...2905 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...ge plots (TAGC plots) to visualise the contents of genome assembly data sets as a QC st...
2895 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAE...sembly composed of, how well those pieces accurately represent the genome sequenced, and how much of that genome is represented by those piece...
2894 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequenc...nstructions: set the read length/configuration and genome size, then select what you wa...C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of...2178 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major requirement for a range of applications. Reference-free methods analyse unproces...ledge, but these do not scale to arbitrarily large genomes and arbitrarily large phylog...2891 days ago
- ...ically atypical proteins on a genome-wide basis. It works by selectin...ntial ortholog matches from a reference database of amino acid sequen...ty index (LPI) score for each genome protein. LPI scores are inve...Users should consult the references cited below for a co...
2886 days ago
- Horizontal gene transfer (HGT), the transfer of genetic mate...rucial for genetic innovation and the evolution of genome architecture. Existing HGT de...estral (vertically derived) genes in its recipient genome. Detecting HGT between closel...
2886 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/dele...
2885 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promoters and enhancers)...interactions between DNA regions, e.g., ChIA-PET and HiC, can generate genome-wide maps of interactions bet...
2881 days ago
- Kaiju is a program for the taxonomic classi...he NCBI taxonomy by comparing it to a reference database containing microbial...ju uses either the available complete genomes from NCBI RefSeq or the micr...in database comprising 4821 microbial genomes. Kaiju can also be used for...
2880 days ago
