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• • Abhimanyu Singh@abhimanyu

  

  SISRS: Site Identification from Short Read Sequences

  Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.

  Tags: SISRS, Site, Identification, Short, Read, Sequences

  2000 days ago

• • Rahul Nayak@rahul

  

  GRIDSS: the Genomic Rearrangement IDentification Software Suite

  GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...

  Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite

  1464 days ago

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