Tags: OrthoGNC, Software, Accurate, Identification, Orthologs, Gene, Neighborhood, Conservation
2361 days ago
SISRS: Site Identification from Short Read Sequences
Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.Tags: SISRS, Site, Identification, Short, Read, Sequences
1982 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite
1446 days ago