Results for "illumina"
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...ng events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. I...2812 days ago
- ...rt and memory-optimised, so it can be run even on the laptop for small-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 or Sanger) and library t...
2796 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical assembler, f...
2788 days ago
- ...sion using short-read deep sequencing data. In its present implementation MIRO is especially adapted for the analysis of reads generated with the Illumina sequencing platform. MIRO all...
2762 days ago
- ...ality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and App...
2733 days ago
- ...for sequencing many loci simultaneously based on bait sequences. HybPiper pipeline starts with high-throughput sequencing reads (for example from Illumina MiSeq), and assigns them to t...
2732 days ago
- ...library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly from Illumina reads. http://evomics.org/le...
2697 days ago
- ...matic outcomes. The program uses information from assemblies made with illumina short reads and PacBio long r...nerated with PacBio long reads alone. This is counterintuitive because illumina short reads are not typically...
2687 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If...
2652 days ago
YASRA: Reference based assembler
...se sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads. YASRA uses L...2615 days ago
