3829 days ago
2897 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 20...1062 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed s...epth from RNA virus samples. We tested IVA on datasets from 140 sequence...-infected people and demonstrated that IVA outperforms all other virus d...from http://sanger-pathogens.github.io/iva https://pubmed.ncbi.nlm.nih....1062 days ago
Genome Assembly Tools and Software - PART1 !!
...directed graph (MSG). With MSG, the standard genome assembly (SGA) is equivalent to the edge merging opera...ange-point analysis to improve the 3′ UTR annotation process. IVA 1.0.3 – Iterative Virus...2700 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly variable depth from RNA virus samples. We tested IVA on datasets from 140 sequenced samples from human immunodeficiency virus-1 or influenza-virus-infected people and demonstrated that IVA outperforms all oth...Tags: iva, virus, assembly, genome, RNA
1062 days ago