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Results for "lines"

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• • Shruti Paniwala@shruti

  

  Extract ten lines below matched string with grep: grep -A 10 "string" filename1 ; -B for above and -C for both #grep #Linux #Tricks #Lines #Matches

  Tags: grep, Linux, Tricks, Lines, Matches

  2720 days ago

• • Jit@jit.aber

  

  Filter #blank #lines from a #fasta file using sed. $ sed '/^$/d' finalSample.fa > finalSample_filtered.fa #Linux #Filter #FASTA #SED

  Tags: blank, lines, fasta, Linux, Filter, FASTA, SED

  2531 days ago

• • Jit@jit.aber

  

  Remove duplicated lines from text file. $ awk '!seen[$0]++' allIds #duplicate #lines #remove #awk

  Tags: duplicate, lines, remove, awk

  2459 days ago

• • Jit@jit.aber

  

  Frequent Paired-end reads (PE 2x100) mapping command lines

  bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ && bwa sampe hs37m r1.sai r2.sai r1.fq r2.fq > r12.bwa.sam bwa bwasw ../index/bwa/hs37m.fa r12.fq > r12.bwasw.sam ...

  Tags: Frequent, Paired-end, reads, (PE 2x100), mapping, command, lines

  2181 days ago