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REAPR: a universal tool for genome assembly evaluation
...d paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works b...2965 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ess. Accuracy: Prodigal is a highly accurate gene finder. It correctly locates the 3' end of every gene in...sophisticated ribosomal binding site scoring system that enables it to locate the translation initiation si...2699 days ago
- ...a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertion...
2649 days ago
Pollux: platform independent error correction of single and mixed genomes
...rrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deleti...2558 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...mic programming to process frame shift. For other protein domains, LTR_FINDER calls ps_scan (from PROSITE, http://www.expasy.org/prosite/) to locate cores of important enzymes if...1954 days ago
