Results for "long reads"
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Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic...st BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster...2881 days ago
- Kaiju is a program for the taxonomic class...etagenomic high-throughput sequencing reads. Each read is directly assign...crobial eukaryotes. Kaiju translates reads into amino acid sequences, wh...search can process up to millions of reads per minute using, for example...
2881 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox fo...ork with hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be p...
2853 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discover...iations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genome...
2810 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or wi...ach condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads. KisSplice is not a full-len...
2831 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is...der that usually requires supervised training and uses information from RNA-Seq reads in the prediction step. Compl...
1963 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as...ly scaffolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is:...
2815 days ago
OPERA : Optimal Paired-End Read Assembler
...information from paired-end/mate-pair/long reads to order and orient the inte...provided by the paired-end/mate-pair/long reads (for further details see Gao...ase contains the wrapper script OPERA-long-read that enables scaffolding with long-reads from third-generation sequenc...2807 days ago
- ...bling Illumina short sequence reads from a mammal-sized genome....present all the information in raw reads.Fermi follows the overlap-lay...produce contigs with slightly longer N50. However, the major weak...misassemblies by using paired-end reads to achieve an accuracy c...
2807 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and po...tion MIRO is especially adapted for the analysis of reads generated with the Illumina s...cing platform. MIRO allows to preprocess the Solexa-reads, map them flexibly to several...
2781 days ago
