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Results for "long reads"

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• • Poonam Mahapatra@poonam

  

  #Extract #Chromosome #Number And Start Position #Reads: samtools view bamfile.bam|awk '{print $3 "\t" $4 "\t" $4+length($10)-1}' > newfile.tab

  2878 days ago

• • Jit@jit.aber

  

  Reads QC http://evomicsorg.wpengine.netdna-cdn.com/wp-content/uploads/2015/01/introQC.pdf #Quality #Reads #NGS

  2838 days ago

• • Shruti Paniwala@shruti

  

  Long-read human genome sequencing and its applications https://www.nature.com/articles/s41576-020-0236-x #LongReads #Sequencing #Genome #Review

  1438 days ago

• • Hardeep Kaur@hardeep

  

  Genome and coverage https://rtsf.natsci.msu.edu/_rtsf/assets/File/depth%20and%20coverage.pdf #Coverage #Genome #Depth #Reads #NGS

  2734 days ago

• • Jit@jit.aber

  

  #Contiguous and #accurate de novo #assembly of #metazoan genomes with modest long read coverage https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkw654

  2635 days ago

• • Jit@jit.aber

  

  Pacbio pipeline http://www.cbcb.umd.edu/software/PBcR/ #Pacbio #Reads #Pipeline

  2619 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  2513 days ago

• • Jit@jit.aber

  

  #Sickle ( https://github.com/najoshi/sickle ) to #trim #reads using a 20-Phred quality threshold

  2503 days ago

• • Jit@jit.aber

  

  #Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

  2503 days ago

• • Jit@jit.aber

  

  Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq #reads #count #ngs #fastq

  2381 days ago

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