Results for "mappings"
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...onceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available through...3017 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...manual, describes how to choose the parameters and tune mrFAST with respect to the library settings. mrFAST is designed to find 'all' mappings for a given set of reads, how...2942 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ng genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization...2925 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...llumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Indeed, MOSAIK was the only aligner to provide consistent mappings for all the generated data (s...2917 days ago
- ...ic graph to find the optimal set of alignments that cover a query using a biologically relevant breakpoint penalty. YAHA can also report multiple mappings per defined segment of the qu...
2673 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly g...2362 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...wever, it avoids expensive sequence alignments and uses Mashmap as its MinHash based sequence mapping engine to compute the orthologous mappings and alignment identity estima...2133 days ago
- ...ripts successively using every sample read data (e.g. several species sequenced by the same lab for a particular study) while allowing read multi-mappings.Several mapping tools impleme...
1955 days ago
- We propose AirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome to another similar genome while maintaining the accuracy of a full mapper.
1606 days ago
