Results for "master in bioinformatics"
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Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just abou...sp;http://www.bestprogramminglanguagefor.me/why-learn-python and http://bioinformaticsonline.com/discussion/view/459...2266 days ago
Some useful Bioinformatics links
...rrangement breakpoint reads | Bioinformatics | Oxford Academic https://academic.oup.com/bioinformatics/article/30/18/2559/24...v/extractSplitReads_BwaMem at master · arq5x/lumpy-sv https://github.com/arq5x/lumpy-sv/blob/master/scripts/extractSplitReads_BwaMem jts/...2252 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get average for a column of numbers (here the sec...
2228 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a difficult problem whose major challenges include identifying correct solutions, an...2213 days ago
- $ sudo apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-...-4) ...Processing triggers for libc-bin (2.23-0ubuntu10) ...➜ redundans git:(master) ✗ pyth...
2201 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs directory in your...;conda create --help. ➜ redundans git:(master) ✗ conda create --name py27 p..., use:# > source deactivate# ➜ redundans git:(master) ✗ sour...2201 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illum...clear.com/landingpages/basetools-a-wide-range-of-bioinformatics-solutions/sspacev12/), ATLAS...useful explanation of several tools. https://bioinformaticsonline.com/search?q=scaffoldin...2176 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open sour...tures and packages of python which are widely used in the big data, NGS, and bioinformatics. I will also walk through a r...2194 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 409...n 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/urbe/Tools/LINK.../bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++ -perl5 Blo...minated. ➜ bloomfilter git:(master) ✗ cd swig ➜ swig git:(mas...2162 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fast...2121 days ago
