Results for "matches"
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...teins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineage probab...2881 days ago
- ...ng a modified backward search on a memory-efficient implementation of the Burrows-Wheeler transform, which finds maximum exact matches (MEMs), optionally allowing mismatches in the protein alignment. The...
2875 days ago
- ...suggest that you start by learning the basics. You should begin by downloading the program from here. You will need to choose the link that matches your computing platform and t...
2753 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...source code can be downloaded here. If you use E-MEM, please cite: N. Khiste, L. Ilie, E-MEM: Efficient computation of Maximal Exact Matches for very large genomes, ...2705 days ago
- ...aligned globally (end-to-end) onto reference chromosomes, ignoring: matches not satisfying cut-offs (--identity and --overlap) suboptimal matches (only best match of each quer...
2700 days ago
- ...motifs with arbitrary insertions and deletions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for matches to motifs (FIMO, MAST and GLA...
2697 days ago
Many-to-many pairwise alignments of two sequence sets
...due or nucleotide match. Needleall finds the alignment with the maximum possible score where the score of an alignment is equal to the sum of the matches taken from the scoring matrix...2154 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to align long r...2189 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...rage and Minimap2 alignments to determine which contigs to keep for the haploid assembly. Dotplots are optionally produced for all flagged contig matches, juxtaposed with read-coverag...1973 days ago
- ...uences. Comparison of the two values results in a single value per k-mer, K-mer Abundance Difference (KAD), which indicates how well the assembly matches read data for each k-mer....
1423 days ago
