BOL: Results for "megablast"

Results for "megablast"

- Jit@jit.aber
Kraken: ultrafast metagenomic sequence classification using exact alignments
...BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster than Megablast and 11 times faster than the...
2865 days ago
- Jit@jit.aber
YAHA
...as fast and accurate as BWA-SW at finding the single best alignment per query and is dramatically faster and more sensitive than both SSAHA2 and MegaBLAST at finding all possible align...
2659 days ago

- Jit@jit.aber
Understanding MegaBlast https://gordonlab.wustl.edu/btheta/blast/docs/megablast_readme.html #Blast #BLASTn #MegaBlast #Alignment
2617 days ago
- Jit@jit.aber
#Target 4 and #HSPS 1 with #blast $ blastn -task megablast -query brkSeq.fa -db myDBAvaga -evalue 1e-5 -num_threads 1 -max_target_seqs 4 -max_hsps 1 -outfmt '6' -out output
2540 days ago

- Jit@jit.aber
BASH script for SelfBLAST a genome
...blast" SEQ=$FASTAFILE else echo "Something went wrong $USER - Contact jitendra" fi echo "Doing alignments -- BLASting"; blastn -task megablast -query $SEQ -db $MYDB -evalue...
2648 days ago
- Jit@jit.aber
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }
2521 days ago
+1 more Bio-Scripts

- EagleEye@santhilalsubhash
Comment on "Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms"
.../strain ? If so try this, 1) Get best matching geneids for individual genes from blastn > blastn -query gene1.fa -out gene1.blast.txt -task megablast -db closest_species -evalue 1...
2631 days ago