BOL: Read a tab delimited file and search with perl

BioScripts
Jit
Read a tab delimited file and search with perl

Read a tab delimited file and search with perl

By Jit 2729 days ago

use strict;
use warnings;
use Data::Dumper;
use Text::CSV;
use IO::Handle;

my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast";
open my $fh, "<", $file or die "$file: $!";
my $csv = Text::CSV->new ({
      sep_char=>"\t",
      binary    => 1, # Allow special character. Always set this
      auto_diag => 1, # Report irregularities immediately
      });

my $fh = IO::Handle->new_from_fd( $fh, 'r' );

while ( not $fh->eof ) {
  my $row = $csv->getline( $fh );
print "$row->[0]\n";
  warn Dumper $row; # To see the structure
}

BOL

Jit

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Read a tab delimited file and search with perl