2706 days ago
2695 days ago
2630 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and s...1127 days ago
2666 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory efficient, and practical for sequence alignments of large genomic regions up to megabases long. We...2539 days ago
2492 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...des with unique high quality extensions in the dataset, avoiding an explicit error correction step as used in other short-read assemblers. A novel memory-efficient hashing scheme is i...2372 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...nscriptome assembly from high-throughput sequencing data, they are very memory-intensive, limiting their app...an be performed on a computing cluster with moderate amount of physical memory. Availability – A software...2134 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
.... Current approaches rely on various graph based alignment techniques and do not take the error profile of the underlying technology into account. Memory- and time- efficient machine...2086 days ago