Results for "memory"
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...GD, BioPerl and the other GBrowse dependencies. If you haven't, please see the GBrowse HOWTO During most of the tutorial, we will be using the "in-memory" GBrowse database (no relatio...2993 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible...2946 days ago
- ...obial eukaryotes. Kaiju translates reads into amino acid sequences, which are then searched in the database using a modified backward search on a memory-efficient implementation of t...
2864 days ago
- ...number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for...
2814 days ago
- ...enome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast & lightweight, multi-core support and memory-optimised, so it can be run e...
2798 days ago
OPERA : Optimal Paired-End Read Assembler
...s (multi-library support, better repeat-handling etc.), in addition to other scalability and usability improvements (bam and gzip support, smaller memory footprint). We therefore enco...2790 days ago
- ...rable to other assemblers, this is not a favorable solution.Fermi is designed to be used on a multi-core Linux machine with large shared memory. The easiest way to run fermi...
2790 days ago
- ...0 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitrarily parallelizable across multiple nodes using MPI) memory efficient. (Even a single nod...
2769 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...educed dispersal matrix describing migration only among the connected sub-populations. This offers a substantial gain in computing time and system memory when simulating very large gr...2767 days ago
- ...y infeasible on both desktop computers and web browsers. In addition to memory requirements, programming ski...interactive biological heatmaps in a web browser. shinyheatmap is a low memory footprint program, making it...
2748 days ago
