Results for "metagenomic"
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...se applications, including de novo genome assembly, deconvolution of metagenomic samples, and inference of cen...data of budding yeast and a human malaria parasite. We then use two metagenomic samples with relatively low c...2999 days ago
- ...nsert length (for paired-end reads), sequencing coverage, read alignment and k-mer frequency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-...
2925 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...rafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous progr...abundance estimation programs, which only classify small subsets of metagenomic data. Using exact alignment o...2863 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read...el, P. et al. (2016) Fast and sensitive taxonomic classification for metagenomics with Kaiju. Nat. Commun. 7:1...
2863 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the...2853 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., ma...
2776 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of...2688 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ven in high GC genomes, with over a 90% perfect match (5'+3') to the Pseudomonas aeruginosa curated annotations. Metagenomic Version: Prodigal can run in metagenomic mode and analyze sequences ev...2678 days ago
- ...t Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute comp...
2611 days ago
- MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175
2614 days ago
