Next generation sequencing in R or bioconductor environment
...riments is the analysis of splice junctions. The following software suggestions provide this utility: ERANGE TopHat SpliceMap SplitSeek DNA-Methylation Data Analysis methylPipe...3624 days ago
Commercial and public next-gen-seq (NGS) software
...Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA..."Shotgun Bisulphite Sequencing of the Arabidopsis Genome Reveals DNA Methylation Patterning" Nature paper by C...3518 days ago
Software packages for next gen sequence analysis
....g. CHiP-Seq, Bis-Seq, CNV-Seq * BS-Seq - The source code and data for the "Shotgun Bisulphite Sequencing of the Arabidopsis Genome Reveals DNA Methylation Patterning" Nature paper by C...3241 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...specific copy number and Loss of Heterozygosity (LOH), and ChIP, and methylation. Next Generation Sequencing (NGS) workflows include: RNA-Seq, miRNA-Seq, ChIP-Seq, DNA-Seq, and Methylation Powerful statistics and inte...2908 days ago