Results for "minimap"
Top-level pages
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...hs) Software (Python) http://github.com/cbib/MICADo General mapper Minimap Lightweight and fast read ma..., a special type of k-mers) Software (C) https://github.com/lh3/minimap Assembly De novo genome ass...2387 days ago
Run miniasm assembler on nanopore reads !
...-vs-all read self-mappings (typically by minimap) as input and outputs an asse...epeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A....">"$2"\n"$3}' > AONT_miniasm.fasta minimap2 -xasm10 AONT_miniasm.fasta A...2346 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | raco...2126 days ago
