Run miniasm assembler on nanopore reads !
...the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A.f...S' AONT.gfa |awk '{print ">"$2"\n"$3}' > AONT_miniasm.fasta minimap2 -xasm10 AONT_miniasm.fasta AO...2347 days ago
Some useful Bioinformatics links
...ts&serviceurl=https%3A%2F%2Fprojects.zoho.eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding...2258 days ago
Frequent parameters for bioinformatics tools !
...-perc_identity 95 blastp (VF) -culling_limit 2 RGI (ABR) --input_type contig bowtie2 (mapping) --sensitive minimap2 (mapping) -a -x map-ont &n...1302 days ago