Results for "minimap2"

Top-level pages

  • Run miniasm assembler on nanopore reads !

    ...the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xava-ont ONT_A.fasta ONT_A.f...S' AONT.gfa |awk '{print ">"$2"\n"$3}' > AONT_miniasm.fasta minimap2 -xasm10 AONT_miniasm.fasta AO...

    2347 days ago

  • Some useful Bioinformatics links

    ...ts&serviceurl=https%3A%2F%2Fprojects.zoho.eu%2Fportal%2Favaga2 lh3/minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences https://github.com/lh3/minimap2 SSPACE-LongRead: scaffolding...

    2258 days ago

  • Frequent parameters for bioinformatics tools !

    ...-perc_identity 95   blastp (VF) -culling_limit 2   RGI (ABR) --input_type contig   bowtie2 (mapping) --sensitive   minimap2 (mapping) -a -x map-ont &n...

    1302 days ago