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Results for "minimap2"

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• • Jit@jit.aber

  

  minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences

  git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT...

  Tags: minimap2, versatile, pairwise, aligner, genomic, spliced, nucleotide, sequences

  2144 days ago

• • Poonam Mahapatra@poonam

  

  Minimap warning "[WARNING] For a multi-part index, no @SQ lines will be outputted."

  While mapping minimap2 return following warning: [WARNING] For a multi-part index, no @SQ lines will be outputted. How to resolve it. 

  Tags: minimap2, warnings, @SQ, index

  2122 days ago

• • Jit@jit.aber

  

  #Mappy provides a convenient #interface to #minimap2, a fast and accurate #C program to #align #genomic and transcribe nucleotide #sequences. https://pypi.org/project/mappy/

  Tags: Mappy, interface, minimap2, C, align, genomic, sequences

  2040 days ago

• • BioStar@biostar

  

  pbmm2:A minimap2 frontend for PacBio native data formats

  pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and postprocess alignments. Sorted output can be used directly for polishing using GenomicConsensus, if BAM has been...

  Tags: pbmm2, minimap2, frontend, PacBio, native, data, formats

  1537 days ago