Results for "misassembly"
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....As a typical de novo assembler, fermi tends to produce contigs with slightly longer N50. However, the major weakness of fermi is the high misassembly rate. Although fermi pro...2810 days ago
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and referen...2145 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...ects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an identified misassembly and will generate a new fasta...1943 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...some construction takes less than a minute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Misassembly correction GFF lift-over St...1667 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish...1566 days ago
RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold merging982 days ago
