Results for "misassembly"
Bookmarks
....As a typical de novo assembler, fermi tends to produce contigs with slightly longer N50. However, the major weakness of fermi is the high misassembly rate. Although fermi pro...2810 days ago
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and referen...2145 days ago
- +4 more Bookmarks
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...k-mer Size for Sequence Assembly. misSEQuel v1.0beta – Misassembly Detection in Draft Genomes...a software that enhances the quality of draft genomes by identifying misassembly errors and their breakpoints...2700 days ago
Tags
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long reads. ReMILO aligns the initial short reads to both the contigs and reference genome, and then constructs a novel data structure called red-black multipositional de Bruijn graph to detect...Tags: ReMILO, reference, assisted, misassembly, detection, algorithm, short, long, reads
2145 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish a large number of false positives from the candidate misassemblies based on the distribution of paired-end reads and the stati...Tags: MEC, Contig, Misassembly, Correction, assembly
1566 days ago
