Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio&r...e open source or freely available for non-commercial use. See the individual project sites for up-to-date license informatio...parate page lists commercial softwa...e. Know of any other open source software fo...2613 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic as...ing depth) and GC values of contigs, and also to annotate the plots with taxonomic information....2602 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which w...usable on most Unix-like platforms, and some platforms have pr...ed binary distributions ready for installation.The source code...cludes [http://samtools.sourceforge.net/ SAMtools], [http://www.cbcb.umd.edu/softwa...2587 days ago
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood rela...n particular all the features of previous softwa...s, as well as ancestral genome structures for dozens...2583 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integ...ell types. By automatically computing state enrichments for la...ectly visualized in a genome browser. ChromHMM software v1...2578 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft...nce. IMAGE, an iterative approach for closing gaps in assembled genomes using mate pair information. It is able to close ga...est assembly. PAGIT bundles these software and makes them more accessible for users.2555 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been...nsion of the Celera Assembler software that was originally developed at Celera for the 2001 publication of the f...bsp;repository on Source Forge is an internet resource for...2552 days ago
ANGES: reconstructing ANcestral GEnomeS maps
This page contains the software ANGES 1.01, that aims at reconstucting ancestral genome maps from homologous markers in extant related genomes. Download Program, vers...2549 days ago