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Comment on "Run miniasm assembler on nanopore reads !"
minimap2 –x ava-ont \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ | gzip -1 > ./minimap....803 days ago
- ...ta with prefix “meta”. We estimate the genome size, tell canu NOT to use HPC (as we don’t have one for porecamp) and give it some ONT data as fasta. This runs pre...
2182 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and mi...ep, and therefore the resulting assemblies are contiguous (i.e. long) but very no...d > reads.fa And then count how many contigs: grep ">" reads.fa...2182 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] col...: 2.3-r531[M::main] CMD: minimap2 -xava-ont -t20 -X both.fastq both.fastq...~/Tools/miniasm/miniasm -f both.fastq AONT.paf > AONT.gfa [][M::main]...2288 days ago
