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Results for "optimization"

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• • Jit@jit.aber

  

  SWALO: Scaffolding with assembly likelihood optimization

  SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Please email your questions, comments, suggestions, and bug reports to atif.bd@gmail.com.

  Tags: SWALO, Scaffolding, assembly, likelihood, optimization

  2151 days ago

• • Jit@jit.aber

  

  HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding.

  Despite marked recent improvements in long-read sequencing technology, the assembly of diploid genomes remains a difficult task. A major obstacle is distinguishing between alternative contigs that represent highly heterozygous regions. If primary and secondary contigs are not properly identified,...

  Tags: HapSolo, optimization, approach, remove, secondary, haplotigs, diploid, genome, assembly, scaffolding

  1292 days ago

• • Jit@jit.aber

  

  HapSolo: An optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

  HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using a cost function. The cost function can be define...

  Tags: HapSolo, optimization, approach, removing, secondary, haplotigs, diploid, genome, assembly, scaffolding

  1098 days ago