Results for "orthologous"
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order an...2924 days ago
- ...ding homology maps is to use exons that are orthologous in multiple genomes as map "a...of each run in each genome are outputted as orthologous segments. The cliques from ea...genomic coordinates of anchors within each orthologous segment. These anchors can be...
2655 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
...ove accuracy and efficiency. The method is also useful for retrospective assessments of horizontal transfer prediction reliability, recognizing orthologous sequences that may have been...2519 days ago
- ...er, when comparing two genomes undergone ancient genome duplications (plant genomes in particular), we have large number of blocks that are not orthologous, but are paralogous. This has...
2480 days ago
orthodotter: Synteny plots (oxford grid)
...----------------------- orthodotter - Plot orthologous genes on an oxford grid....f <file> : input file, containing orthologous genes, default is stdin...nt> : radius of circle representing orthologous genes -format :...2471 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...engine can annotate a typical-sized bacterial genome within 10 minutes, with rich information such as pseudogenes, translation exceptions, and orthologous gene assignment between given...2373 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...ng evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all...2369 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...eotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two...map as its MinHash based sequence mapping engine to compute the orthologous mappings and alignment identi...2132 days ago
Mercator: Multiple Whole-Genome Orthology Map Construction
...(Passarge et al. 1999) and thus we will use the terms "homologous", "orthologous", and "paralogous" instead. Ideally, given K genomes, we would like to identify all orthologous genomic regions as well as pa...1456 days ago
- This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In be...
856 days ago
