Results for "output"
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...iled alignment within the limited regions found in the first stage. The output of Cgaln is 'glocal' in the s...Cgaln is not only fast and memory-efficient, but also can filter noisy outputs without missing the most imp...2628 days ago
Many-Core Engine (MCE) for Perl example
...y-Core Engine. MCE EXTRAS There are 4 add-on modules for use with MCE. MCE::Candy Provides a collection of sugar methods and output iterators for preserving output order. MCE::Mutex Provides...2650 days ago
- ...art of a run are discarded. The extents of each run in each genome are outputted as orthologous segments. The cliques from each run are used to output the exact genomic coordinates...
2644 days ago
- ...chromosomes with normalized heatmap (described below) --annotate, -a Add character annotations. --out, -o PDF output name. --stripes, -s Sp...
2637 days ago
- ...gs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of assembly contigs against the reference. The output is then processed to generate...
2634 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangeme...
2633 days ago
splitbam: splits a BAM by chromosomes
...pty : generate EMPTY bams for chromosome having no read mapped -m | --mock : if option '-e', add a mock pair of sam records to the empty bam -p (output file/bam pattern) REQUIRED. M...2622 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignme...2621 days ago
- ...Institute to bundle a FASTA sequence and its quality data, but has recently become the de facto standard for storing the output of high-throughput sequencing...
2558 days ago
Genome Annotation Transfer Utility (GATU)
...peptides. Although it was designed for use with viral genomes, GATU can also be used to help annotate larger genomes (ie. bacterial genomes). The output is saved in GenBank, XML, or...2532 days ago
