2096 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...1,1,1,1 -w200 -b0 -e0.30 -d0.30 ont2d (Oxford Nanopore): -i25 -l50 -m1 -M1 -O1,1,1,1 -E1,1,1,1 -w100 -b0 -e0.25 -d0.10 Output options: -r --max-out [INT] Maximum number of output records for a specific split...2120 days ago
2120 days ago
2134 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...2 Run miniasm: This uses your concatenated FASTQ file and the PAF file output from the miniasm step. The co...gt; /home/data/20170918_oly_pacbio_miniasm_reads.gfa 3 Convert miniasm output GFA to FASTA The FASTA file...2164 days ago
2172 days ago
Comment on "Perl one-liner for bioinformatician !!!"
...t file to lowercase dd $ dd if=input.txt of=output.txt conv=lcase tr $ tr '[:upper:]' '[:lower:]' < input.txt > output.txt awk $ awk '{ print tolo...perl $ perl -pe '$_= lc($_)' input.txt > output.txt sed $ sed -e 's/\(.*\)/...2211 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...-d <reads_file> -o <output_sam_path> Usage: graphmap [options] Options Input/Output options: -r, --ref STR Path t...ut-fmt STR Format in which to output results. Options are: sam - S...al to 0 nothing except strict output will be placed on stdout. [5]...2289 days ago
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2658 days ago