1530 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...Maximum allowed number of seeding fragments' hits. [200] -V --SV-len [INT] Expected maximum length of SV. [10000] -v --ovlp-rat [FLOAT] Minimum overlapping ratio to cluster two skeleton...2133 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...nce. (Currently no other options are provided. This is a placeholder for future features, such as cDNA mapping) [normal] --overlapper - Perform overlapping instead of mapping. Skips sel...2302 days ago
Comment on "Software packages for next gen sequence analysis"
DNAMAN uses fast alignment algorithms to assemble quickly and accurately a large number of overlapping sequences. This could be a nice tutorial for genome assemblies with overlapping sequences http://www.lynnon.com/pc/assembly.html3250 days ago