PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained...Jelly is a highly automated pipeline that aligns long sequencing reads (such as PacB...2638 days ago
Pacbio Long Reads Compatible Software and Tools
...following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packag...ercial software. Know of any other open source software for PacBio data? Email us. Softw...2621 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd ge...rate, and is especially intended for PacBio reads. It uses a hybrid strat...rate is assumed to be small, and the PacBio read set, which is then corre..., a larger portion of the sequence of PacB...2596 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs th...embly. An improved version, especially correction Pacfic Bioscience assemblies (PacB...2564 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/1604...ac/ra-integrate).Ra attempts to create de novo assemblies from raw nanopore and PacB...2538 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacB...2382 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy lon...It has only been tested on a dozen of PacBio and Oxford Nanopore (ONT) bac...etting, miniasm assembles 9 out of 12 PacBio datasets and 3 out of 4 ONT d...ble to generate long contigs from raw PacB...2365 days ago
2349 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Inp...be in fasta or fastq format. These sequences will be corrected (e.g. PacB...1995 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy...4, ... proovread maps high coverage data to pacb...2326 days ago