3701 days ago
Alignment of closely related whole genomes/scaffolds
...across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the stud...3022 days ago
RNA-Seq De novo Assembly Using Trinity
...s the full read set among these disjoint graphs. Butterfly then processes the individual graphs in parallel, tracing the paths that reads and pairs of reads take within the grap...2968 days ago
REAPR: a universal tool for genome assembly evaluation
...ng information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (...2954 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely...2934 days ago
2822 days ago
2806 days ago
2785 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...of linkage can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci can be s...2776 days ago
2767 days ago