Results for "pairs"
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...put options: amplicons, WGS (whole genome sequences) and metatranscriptomic data. If amplicons are input data, then bipype does reconstruction and pairs merging. After that biodivers...2726 days ago
- ...lt. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for dete...
2717 days ago
- ...; -s) (Comma separated list of) library(-ies) standard deviation(s) of insert size(s); -t) Bundle threshold. Pairs of contigs supported by number of read pairs less than the value of this a...
2714 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...nomical method for detecting genomic structural variants and chromosomal abnormalities. Unfortunately, the mapping and alignment of mate pair read pairs to a reference genome is a ch...2713 days ago
- ...ssible. Thus, Cgaln is not only fast and memory-efficient, but also can filter noisy outputs without missing the most important homologous segment pairs. http://www.iam.u-tokyo.ac.j...
2643 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along...-value score between homologs, maximally scoring chains of ordered gene pairs are computed and reported. Th...2648 days ago
- ...n, and many others. These properties make JSON an ideal data-interchange language. JSON is built on two structures: A collection of name/value pairs. In various languages, this i...
2602 days ago
DeCoSTAR - Detection of Co-evolution
...software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene do...2592 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
SMASH is a completely alignment-free method to find and visualise rearrangements between pairs of DNA sequences. The detection is based on relative compression, namely using a F...2341 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...be performed by either a maximum parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to be use...2266 days ago
