3712 days ago
Alignment of closely related whole genomes/scaffolds
...across the tree of life. This increasing volume of data requires tools that can quickly compare multiple whole-genome sequences, millions of base pairs in length, to aid in the stud...3033 days ago
RNA-Seq De novo Assembly Using Trinity
...s the full read set among these disjoint graphs. Butterfly then processes the individual graphs in parallel, tracing the paths that reads and pairs of reads take within the grap...2980 days ago
REAPR: a universal tool for genome assembly evaluation
...ng information such as the fragment coverage and insert size distribution is analysed to locate mis-assemblies. REAPR works best using mapped read pairs from a large insert library (...2965 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely...2945 days ago
2833 days ago
2817 days ago
2797 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...of linkage can thus be finely explored. A new trait coding for (Bateson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci can be s...2787 days ago
2778 days ago