Results for "phase"
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GAM-NGS: genomic assemblies merger for next generation sequencing
...ing the same genomic locus (called blocks) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help...2702 days ago
- ...rt. This algorithm was first implemented in my fermi assembler and then refined a few times in fermi, fermi2 and now in BFC. In the k-mer counting phase, BFC uses a blocked bloom fil...
2174 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...Employing a specialized hidden Markov model to align reads to candidate alleles while accounting for STR artifacts Utilizing phased SNP haplotypes to genotype and phase STRs...1893 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel Compiler only...1567 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
This tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. The tutorial is an abbreviated version of a soon-to-be published paper in M...344 days ago
