Results for "population"
Tags
GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where presence-absence status of acquired genes is usually confound...Tags: GeneMates, R, package, Horizontal, Gene, Co-transfer, Bacteria, Associations, Population, Structure
1535 days ago
PSPairwise Sequentially Markovian Coalescent (PSMC) model
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) modelTags: Pairwise, Sequentially, Markovian, Coalescent, PSMC, model, genomics, population
2223 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the genetic clustering program structure or by other similar programs. The figures produced by distructdisplay individual membership coefficients in the same form as used in "Genetic structu...Tags: DISTRUCT, program, graphical, display, population, structure
1883 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fastaTags: mutatrix, population, genome, simulator, generates, simulated, genomes, ngs, test
1574 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s computer/browser. VCF2PopTree is compatible with all population browsers including Chrome, Opera, Edge and Firefox and works equally efficient in Mac, Windows and Linux (Ubuntu). Fu...Tags: VCF2PopTree, client-side, software, construct, population, phylogeny, genome-wide, SNPs
877 days ago
